DeforaNetworks/deepstate
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allow multiple reducer runs in a directory, using PID in filenames

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agroce 2019-05-18 19:20:38 -07:00
parent c1a8f7d091
commit bf3395f297
1 changed files with 6 additions and 4 deletions
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10
bin/deepstate/reducer.py
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@ -16,8 +16,10 @@
from __future__ import print_function
import argparse
import subprocess
import os
import time
def main():
global candidateRuns
@ -78,7 +80,7 @@ def main():
candidateRuns += 1
if (time.time() - start) > args.timeout:
raise TimeoutException
with open(".reducer.out", 'w') as outf:
with open(".reducer." + str(os.getpid()) + ".out", 'w') as outf:
cmd = [deepstate + " --input_test_file " +
candidate + " --verbose_reads"]
if whichTest is not None:
@ -87,7 +89,7 @@ def main():
cmd += ["--no_fork"]
subprocess.call(cmd, shell=True, stdout=outf, stderr=outf)
result = []
with open(".reducer.out", 'r') as inf:
with open(".reducer." + str(os.getpid()) + ".out", 'r') as inf:
for line in inf:
result.append(line)
return result
@ -105,9 +107,9 @@ def main():
return False
def writeAndRunCandidate(test):
with open(".candidate.test", 'wb') as outf:
with open(".candidate." + str(os.getpid()) + ".test", 'wb') as outf:
outf.write(test)
r = runCandidate(".candidate.test")
r = runCandidate(".candidate." + str(os.getpid()) + ".test")
return r
def structure(result):